{
  "_id": "6a1ff4c6b401979e73442f03",
  "Package": "DUToolkit",
  "Title": "Visualizing and Quantifying Decision Uncertainty",
  "Version": "1.0.2",
  "Authors@R": "c(\nperson(given = \"Megan\", family = \"Wiggins\", email = \"mwiggins@ihe.ca\",\nrole = c(\"aut\", \"cre\"), comment = c(ORCID = \"0009-0007-0290-4950\")),\nperson(given = \"Marie Betsy\", family = \"Varughese\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-8432-6539\")),\nperson(given = \"Ellen\", family = \"Rafferty\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-9974-8016\")),\nperson(given = \"Sasha\", family = \"van Katwyk\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-3026-2063\")),\nperson(given = \"Christopher\", family = \"McCabe\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-5728-4129\")),\nperson(given = \"Jeff\", family = \"Round\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-3103-6984\")),\nperson(given = \"Erin\", family = \"Kirwin\", role = c(\"aut\"),\ncomment = c(ORCID = \"0000-0001-6957-7236\")),\nperson(given = \"Institute of Health Economics\", role = c(\"cph\", \"aut\")),\nperson(given = \"Canadian Network for Modelling Infectious Diseases \",\nrole = c(\"fnd\"))\n)",
  "Description": "A suite of tools to help modelers and decision-makers\neffectively interpret and communicate decision risk when\nevaluating multiple policy options. It uses model outputs from\nuncertainty analysis for baseline scenarios and policy\nalternatives to generate visual representations of uncertainty\nand quantitative measures for assessing associated risks. For\nmore details see Wiggins and colleagues (2025)\n<doi:10.1371/journal.pone.0332522> and <https://dut.ihe.ca/>.",
  "License": "GPL (>= 2)",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.1",
  "VignetteBuilder": "knitr",
  "LazyData": "true",
  "LazyDataCompression": "xz",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 09:29:31 UTC",
    "User": "root"
  },
  "Author": "Megan Wiggins [aut, cre] (ORCID:\n<https://orcid.org/0009-0007-0290-4950>), Marie Betsy Varughese\n[aut] (ORCID: <https://orcid.org/0000-0002-8432-6539>), Ellen\nRafferty [aut] (ORCID:\n<https://orcid.org/0000-0001-9974-8016>), Sasha van Katwyk\n[aut] (ORCID: <https://orcid.org/0000-0003-3026-2063>),\nChristopher McCabe [aut] (ORCID:\n<https://orcid.org/0000-0001-5728-4129>), Jeff Round [aut]\n(ORCID: <https://orcid.org/0000-0002-3103-6984>), Erin Kirwin\n[aut] (ORCID: <https://orcid.org/0000-0001-6957-7236>),\nInstitute of Health Economics [cph, aut], Canadian Network for\nModelling Infectious Diseases [fnd]",
  "Maintainer": "Megan Wiggins <mwiggins@ihe.ca>",
  "Config/pak/sysreqs": "libicu-dev libjpeg-dev libpng-dev libxml2-dev\nlibssl-dev",
  "Repository": "https://mwiggins-ihe.r-universe.dev",
  "Date/Publication": "2025-10-06 16:40:02 UTC",
  "RemoteUrl": "https://github.com/cran/DUToolkit",
  "RemoteRef": "HEAD",
  "RemoteSha": "55ef2dbd97043fbccb4881e70017d56199389225",
  "MD5sum": "c125fe94b76b944297761c9ca360e564",
  "_user": "mwiggins-ihe",
  "_type": "src",
  "_file": "DUToolkit_1.0.2.tar.gz",
  "_fileid": "37fb4bd8e48eb062a0d0a33b926ddb717b95164b7f8139d10751aae2665c2dbe",
  "_filesize": 1908127,
  "_sha256": "37fb4bd8e48eb062a0d0a33b926ddb717b95164b7f8139d10751aae2665c2dbe",
  "_created": "2026-06-03T09:29:31.000Z",
  "_published": "2026-06-03T09:32:54.377Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79263464762,
      "time": 154,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7380817597"
    },
    {
      "job": 79263464640,
      "time": 168,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7380822697"
    },
    {
      "job": 79263464733,
      "time": 161,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7380811687"
    },
    {
      "job": 79263464591,
      "time": 146,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7380807324"
    },
    {
      "job": 79262832118,
      "time": 216,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7380759279"
    },
    {
      "job": 79263464556,
      "time": 117,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7380804113"
    },
    {
      "job": 79263464650,
      "time": 107,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7380800144"
    },
    {
      "job": 79263464672,
      "time": 145,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7380814575"
    },
    {
      "job": 79263464731,
      "time": 91,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7380794449"
    }
  ],
  "_buildurl": "https://github.com/r-universe/mwiggins-ihe/actions/runs/26875848740",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/DUToolkit",
  "_commit": {
    "id": "55ef2dbd97043fbccb4881e70017d56199389225",
    "author": "Megan Wiggins <mwiggins@ihe.ca>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 1.0.2\n",
    "time": 1759768802
  },
  "_maintainer": {
    "name": "Megan Wiggins",
    "email": "mwiggins@ihe.ca",
    "login": "mwiggins-ihe",
    "description": "",
    "uuid": 133423476
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "ggdist",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggtext",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-37",
      "n": 1
    },
    {
      "week": "2025-38",
      "n": 1
    },
    {
      "week": "2025-41",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "1.0.0",
      "date": "2025-09-14"
    },
    {
      "name": "1.0.1",
      "date": "2025-09-16"
    },
    {
      "name": "1.0.2",
      "date": "2025-10-06"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "mwiggins-ihe",
      "count": 3,
      "uuid": 133423476
    }
  ],
  "_userbio": {
    "uuid": 133423476,
    "type": "user",
    "name": "mwiggins-ihe"
  },
  "_downloads": {
    "count": 147,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/DUToolkit"
  },
  "_searchresults": 9,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/DUToolkit.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_realowner": "mwiggins-ihe",
  "_cranurl": false,
  "_releases": [
    {
      "version": "1.0.0",
      "date": "2025-09-14"
    },
    {
      "version": "1.0.1",
      "date": "2025-09-16"
    },
    {
      "version": "1.0.2",
      "date": "2025-10-06"
    }
  ],
  "_exports": [
    "calculate_max_min_risk",
    "calculate_risk",
    "calculate_threshold_probs",
    "calculate_time",
    "get_max_min_values",
    "get_relative_values",
    "plot_density",
    "plot_fan",
    "plot_raincloud",
    "plot_temporal",
    "sum_stats_temporal",
    "tabulate_risk"
  ],
  "_datasets": [
    {
      "name": "psa_data",
      "title": "Sample PSA data",
      "object": "psa_data",
      "class": [
        "list"
      ],
      "fields": [],
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "calculate_max_min_risk",
      "title": "Calculate risk measures at peak (or minimum)",
      "topics": [
        "calculate_max_min_risk"
      ]
    },
    {
      "page": "calculate_risk",
      "title": "Calculate risk measures",
      "topics": [
        "calculate_risk"
      ]
    },
    {
      "page": "calculate_threshold_probs",
      "title": "Calculate threshold exceedance probabilities",
      "topics": [
        "calculate_threshold_probs"
      ]
    },
    {
      "page": "calculate_time",
      "title": "Calculate time of threshold exceedance",
      "topics": [
        "calculate_time"
      ]
    },
    {
      "page": "get_max_min_values",
      "title": "Finds peak (or lowest) model output values",
      "topics": [
        "get_max_min_values"
      ]
    },
    {
      "page": "get_relative_values",
      "title": "Find output values at time points relative to the peak (or minimum)",
      "topics": [
        "get_relative_values"
      ]
    },
    {
      "page": "plot_density",
      "title": "Generate density plots",
      "topics": [
        "plot_density"
      ]
    },
    {
      "page": "plot_fan",
      "title": "Generate time-outcome fan plots",
      "topics": [
        "plot_fan"
      ]
    },
    {
      "page": "plot_raincloud",
      "title": "Generate raincloud plot",
      "topics": [
        "plot_raincloud"
      ]
    },
    {
      "page": "plot_temporal",
      "title": "Generate temporal probability density plots",
      "topics": [
        "plot_temporal"
      ]
    },
    {
      "page": "psa_data",
      "title": "Sample PSA data",
      "topics": [
        "psa_data"
      ]
    },
    {
      "page": "sum_stats_temporal",
      "title": "Calculates summary statistics at specified time points relative to the peak (or minimum)",
      "topics": [
        "sum_stats_temporal"
      ]
    },
    {
      "page": "tabulate_risk",
      "title": "Output risk measures to table",
      "topics": [
        "tabulate_risk"
      ]
    }
  ],
  "_readme": "https://github.com/cran/DUToolkit/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "commonmark",
    "cpp11",
    "curl",
    "distributional",
    "farver",
    "generics",
    "ggdist",
    "ggplot2",
    "ggtext",
    "glue",
    "gridtext",
    "gtable",
    "isoband",
    "jpeg",
    "labeling",
    "lifecycle",
    "litedown",
    "magrittr",
    "markdown",
    "numDeriv",
    "pillar",
    "pkgconfig",
    "png",
    "quadprog",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "S7",
    "scales",
    "stringi",
    "stringr",
    "tibble",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "xml2"
  ],
  "_vignettes": [
    {
      "source": "Calculating_Risk.Rmd",
      "filename": "Calculating_Risk.html",
      "title": "Calculating Risk",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Formula",
        "Risk measure formula",
        "Risk measure formula with weights",
        "Calculating risk with DUToolkit",
        "Sharing outputs",
        "Standard description",
        "Standard description bullet points"
      ],
      "created": "2025-09-14 16:10:18",
      "modified": "2025-09-14 16:10:18",
      "commits": 1
    },
    {
      "source": "DUToolkit.Rmd",
      "filename": "DUToolkit.html",
      "title": "Introduction to DUToolkit",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Getting started",
        "Synthetic data",
        "Data format"
      ],
      "created": "2025-09-14 16:10:18",
      "modified": "2025-10-06 16:40:02",
      "commits": 2
    },
    {
      "source": "density_plots.Rmd",
      "filename": "density_plots.html",
      "title": "Probability density plots with risk shading",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Sharing outputs",
        "Standard description",
        "Standard description bullet points"
      ],
      "created": "2025-09-14 16:10:18",
      "modified": "2025-09-14 16:10:18",
      "commits": 1
    },
    {
      "source": "rain_plot.Rmd",
      "filename": "rain_plot.html",
      "title": "Raincloud plots",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Sharing outputs",
        "Standard description",
        "Standard description bullet points"
      ],
      "created": "2025-09-14 16:10:18",
      "modified": "2025-09-14 16:10:18",
      "commits": 1
    },
    {
      "source": "temporal_plot.Rmd",
      "filename": "temporal_plot.html",
      "title": "Temporal probability density plots",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Sharing outputs",
        "Standard description",
        "Standard description bullet points"
      ],
      "created": "2025-09-14 16:10:18",
      "modified": "2025-09-14 16:10:18",
      "commits": 1
    },
    {
      "source": "Fan_Plots.Rmd",
      "filename": "Fan_Plots.html",
      "title": "Time-outcome fan plots",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Sharing outputs",
        "Standard description",
        "Standard description bullet points"
      ],
      "created": "2025-09-14 16:10:18",
      "modified": "2025-09-14 16:10:18",
      "commits": 1
    }
  ],
  "_score": 3.954242509439325,
  "_indexed": true,
  "_nocasepkg": "dutoolkit",
  "_universes": [
    "mwiggins-ihe"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-03T09:32:00.000Z",
      "distro": "noble",
      "commit": "55ef2dbd97043fbccb4881e70017d56199389225",
      "fileid": "5e19476f3854c046c5c442f2431b97cc4248b5382698df85a00103128e651971",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mwiggins-ihe/actions/runs/26875848740"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.0.2",
      "date": "2026-06-03T09:32:12.000Z",
      "distro": "noble",
      "commit": "55ef2dbd97043fbccb4881e70017d56199389225",
      "fileid": "57b3086586fa50b9a0fea44769dd9ad457e42e5e46f17290e4fe2d32ee346a8b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mwiggins-ihe/actions/runs/26875848740"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-03T09:31:50.000Z",
      "commit": "55ef2dbd97043fbccb4881e70017d56199389225",
      "fileid": "6424df1ad2a22e670a769bfd5179de2346b2f5e7792f73f782a5a13936c416a3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mwiggins-ihe/actions/runs/26875848740"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.0.2",
      "date": "2026-06-03T09:31:39.000Z",
      "commit": "55ef2dbd97043fbccb4881e70017d56199389225",
      "fileid": "2a794e9e187ce3580713be3cc0bf1ce881b7f83cbed4ea2a0291602e28bc2805",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mwiggins-ihe/actions/runs/26875848740"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.0.2",
      "date": "2026-06-03T09:31:48.000Z",
      "commit": "55ef2dbd97043fbccb4881e70017d56199389225",
      "fileid": "db0309d0d1c9f0b9910a7bc415750997bb6ab0f7c638800d3cd4e7922dda0dd6",
      "status": "success",
      "buildurl": "https://github.com/r-universe/mwiggins-ihe/actions/runs/26875848740"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-03T09:31:03.000Z",
      "commit": "55ef2dbd97043fbccb4881e70017d56199389225",
      "fileid": "d21470c48390ddaf4cac45e4a70a0ff6137a85d3ad1e9f8f461f2cc7db2d422c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mwiggins-ihe/actions/runs/26875848740"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-03T09:31:39.000Z",
      "commit": "55ef2dbd97043fbccb4881e70017d56199389225",
      "fileid": "dc59d37954fd0d7d0223ee56c662d8d4fa4f62007f84247d03f4d6362311d1fa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mwiggins-ihe/actions/runs/26875848740"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.0.2",
      "date": "2026-06-03T09:30:50.000Z",
      "commit": "55ef2dbd97043fbccb4881e70017d56199389225",
      "fileid": "bf02e20903f6838f219d918624facec621ee6173dfa7ff6f3ab29a9217f6cf7e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/mwiggins-ihe/actions/runs/26875848740"
    }
  ]
}